The BioImage Informatics Facility provides the support and training you need to perform state-of-the-art analyses on your image data. Our experts can help you deploy computational methods using computer vision, machine learning, and bioinformatics to analyze your images. Whether you are looking for training on how to use existing software solutions or help developing a custom workflow, we can help you get your analysis running.

For more information, you can contact us at mailto:biif@scilifelab.se.

You can find beyond a collection of ongoing and completed projects supported by the BioImage Informatics Facility.



Ubiquitin Screen

Ubiquitin Screen

Ubiquitin is a small protein that is found in almost all cellular tissues in humans and other eukaryotic organisms, which helps to regulate the processes of other proteins in the body. Cultured cell...

Cell Time-Lapse Analysis

Cell Time-Lapse Analysis

he aim of the project is to interpret differences in migration-proliferation of cells with different treatments and express those in a quantitative manner. We used a 'scratch assay' approach, or 'wo...

Vascular Networks

Vascular Networks

In this project we analyze vascular networks in the mouse brain, retina networks and cell junction activations. We have several applications where we skeletonize the networks and extract branch poin...

Segmentation of Neurons

Segmentation of Neurons

The goal of this project is to analyze neurons grown from stem cells in vitro. The aim is to assess the percentage of neurons (using B-tubulin) and certain neuron subtypes (GABA) by immunofluorescen...

Quantification of Zebrafish Lipid Droplets

Quantification of Zebrafish Lipid Droplets

The aim of this project is to identify novel targets for the therapeutic intervention of coronary artery disease. This is done by following-up results from genome-wide association studies in epidemi...


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